With this webinterface you can search your RNA/DNA for several known RNA structures and retrieve some general information of your sequence.

Please choose your options below!

Name your sequence (optional)

If several FASTA-sequences are provided, please check the box Click here to get more information on this feature
 SEQUENCE        Sequence is RNA

Special features:          IRE    Trans-splicing structure

Examples to test

If you need more information or if RNAAnalyzer was useful for you, you might have a look at / cite:

Peter Bengert and Thomas Dandekar
A software tool-box for analysis of regulatory RNA elements
Nucl. Acids. Res. 2003 31: 3441-3445.

The RNAAnalyzer has temporarily been down due to migration problems. This should be fixed now.